Index

_

__init__() (nepidemix.process.AttributeStateProcess method), [1] (nepidemix.process.ExplicitStateProcess method), [1] (nepidemix.process.Process method), [1] (nepidemix.process.ScriptedProcess method), [1] (nepidemix.simulation.Simulation method), [1] (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method), [1] (nepidemix.utilities.networkgeneratorwrappers.NetworkGenerator method), [1]

A

add_section() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method) albert_barabasi_physrevlett_quick() (in module nepidemix.utilities.networkxtra) albert_barabasi_physrevlett_rigid() (in module nepidemix.utilities.networkxtra)

attributeCount() (in module nepidemix.utilities.networkxtra) AttributeStateProcess (class in nepidemix.process) attributeValueDeal() (in module nepidemix.utilities.networkxtra)

C

CFG_PARAM_avgclust (nepidemix.simulation.Simulation attribute) CFG_PARAM_avgdegree (nepidemix.simulation.Simulation attribute) CFG_PARAM_baseFileName (nepidemix.simulation.Simulation attribute) CFG_PARAM_config_file (nepidemix.process.ScriptedProcess attribute) CFG_PARAM_deal_exact (nepidemix.process.AttributeStateProcess attribute) (nepidemix.process.ScriptedProcess attribute) CFG_PARAM_dt (nepidemix.simulation.Simulation attribute) CFG_PARAM_edge_init (nepidemix.simulation.Simulation attribute) CFG_PARAM_execute_time (nepidemix.simulation.Simulation attribute) CFG_PARAM_include_files (nepidemix.simulation.Simulation attribute) CFG_PARAM_iterations (nepidemix.simulation.Simulation attribute) CFG_PARAM_mod_path (nepidemix.simulation.Simulation attribute) CFG_PARAM_network_init (nepidemix.simulation.Simulation attribute) CFG_PARAM_network_module (nepidemix.simulation.Simulation attribute) CFG_PARAM_network_name (nepidemix.simulation.Simulation attribute) CFG_PARAM_node_init (nepidemix.simulation.Simulation attribute) CFG_PARAM_outputDir (nepidemix.simulation.Simulation attribute) CFG_PARAM_process_module (nepidemix.simulation.Simulation attribute) CFG_PARAM_process_name (nepidemix.simulation.Simulation attribute) CFG_PARAM_save_config (nepidemix.simulation.Simulation attribute) CFG_PARAM_save_network (nepidemix.simulation.Simulation attribute) CFG_PARAM_save_network_compress_file (nepidemix.simulation.Simulation attribute) CFG_PARAM_save_network_format (nepidemix.simulation.Simulation attribute)

CFG_PARAM_save_network_interval (nepidemix.simulation.Simulation attribute) CFG_PARAM_save_state_count (nepidemix.simulation.Simulation attribute) CFG_PARAM_save_state_count_interval (nepidemix.simulation.Simulation attribute) CFG_PARAM_save_state_influx (nepidemix.simulation.Simulation attribute) CFG_PARAM_save_state_influx_interval (nepidemix.simulation.Simulation attribute) CFG_PARAM_uniqueFileName (nepidemix.simulation.Simulation attribute) CFG_SECTION_edge_attribs (nepidemix.process.ScriptedProcess attribute) CFG_SECTION_edge_rules (nepidemix.process.ScriptedProcess attribute) CFG_SECTION_EDGE_STATE_DIST (nepidemix.simulation.Simulation attribute) CFG_SECTION_INFO (nepidemix.simulation.Simulation attribute) CFG_SECTION_LOG (nepidemix.simulation.Simulation attribute) CFG_SECTION_mean_field (nepidemix.process.ScriptedProcess attribute) CFG_SECTION_MOD (nepidemix.simulation.Simulation attribute) CFG_SECTION_NETWORK (nepidemix.simulation.Simulation attribute) CFG_SECTION_node_attribs (nepidemix.process.ScriptedProcess attribute) CFG_SECTION_node_rules (nepidemix.process.ScriptedProcess attribute) CFG_SECTION_NODE_STATE_DIST (nepidemix.simulation.Simulation attribute) CFG_SECTION_OUTPT (nepidemix.simulation.Simulation attribute) CFG_SECTION_SIM (nepidemix.simulation.Simulation attribute) configure() (nepidemix.simulation.Simulation method) create() (nepidemix.utilities.networkgeneratorwrappers.NetworkGenerator method)

D

deduceEdgeState() (nepidemix.process.AttributeStateProcess method) (nepidemix.process.ExplicitStateProcess method) (nepidemix.process.Process method) (nepidemix.process.ScriptedProcess method)

deduceNodeState() (nepidemix.process.AttributeStateProcess method) (nepidemix.process.ExplicitStateProcess method) (nepidemix.process.Process method) (nepidemix.process.ScriptedProcess method)

E

edgeUpdateRule() (nepidemix.process.AttributeStateProcess method) (nepidemix.process.ExplicitStateProcess method) (nepidemix.process.Process method) (nepidemix.process.ScriptedProcess method) evaluateSection() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

execute() (nepidemix.simulation.Simulation method) ExplicitStateProcess (class in nepidemix.process)

G

get() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method) getboolean() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method) getfloat() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

getint() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method) getrange() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

H

has_option() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

has_section() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

I

initializeNetwork() (nepidemix.process.AttributeStateProcess method) (nepidemix.process.ExplicitStateProcess method) (nepidemix.process.Process method) (nepidemix.process.ScriptedProcess method) initializeNetworkEdges() (nepidemix.process.AttributeStateProcess method) (nepidemix.process.ExplicitStateProcess method) (nepidemix.process.Process method) (nepidemix.process.ScriptedProcess method)

initializeNetworkNodes() (nepidemix.process.AttributeStateProcess method) (nepidemix.process.ExplicitStateProcess method) (nepidemix.process.Process method) (nepidemix.process.ScriptedProcess method) items() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

L

loadNetwork() (in module nepidemix.utilities.networkxtra)

N

neighbors_data_iter() (in module nepidemix.utilities.networkxtra) nepidemix.process (module) nepidemix.simulation (module) nepidemix.utilities.nepidemixconfigparser (module) nepidemix.utilities.networkgeneratorwrappers (module)

nepidemix.utilities.networkxtra (module) NepidemiXConfigParser (class in nepidemix.utilities.nepidemixconfigparser) NetworkGenerator (class in nepidemix.utilities.networkgeneratorwrappers) networkUpdateRule() (nepidemix.process.AttributeStateProcess method) (nepidemix.process.ExplicitStateProcess method) (nepidemix.process.Process method) (nepidemix.process.ScriptedProcess method) nodeUpdateRule() (nepidemix.process.AttributeStateProcess method) (nepidemix.process.ExplicitStateProcess method) (nepidemix.process.Process method) (nepidemix.process.ScriptedProcess method)

O

options() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

P

parseMapping() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method) parseRange() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method) parseTuple() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

powerlaw_degree_sequence() (in module nepidemix.utilities.networkxtra) Process (class in nepidemix.process)

R

read() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

readfp() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

S

saveData() (nepidemix.simulation.Simulation method) ScriptedProcess (class in nepidemix.process) sections() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method) set() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)

Simulation (class in nepidemix.simulation) STATE_ATTR_NAME (nepidemix.process.ExplicitStateProcess attribute) STATE_COUNT_FIELD_NAME (nepidemix.simulation.Simulation attribute) STATE_INFLUX_FIELD_NAME (nepidemix.simulation.Simulation attribute)

T

TIME_FIELD_NAME (nepidemix.simulation.Simulation attribute)

W

write() (nepidemix.utilities.nepidemixconfigparser.NepidemiXConfigParser method)